Bioinference @ University of Manchester


Manchester Bioinference develop computational and machine learning methods to study complex biological systems using spatial and single-cell omics, imaging, and health data.

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Rufus H. Daw, Harry R. Deijnen, Magnus Rattray, John R. Grainger (2026). CellTypeAI: Automated cell identification for scRNA-seq using local generative-AI. openRxiv.

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Mike Phuycharoen, Verena Kaestele, Thomas Williams, Lijing Lin, Tracy Hussell, John Grainger, Magnus Rattray (2026). Integration of unpaired and heterogeneous clinical flow cytometry data. iScience.

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\Robert J\ Maidstone, \A Louise\ Hunter, Mudassar Iqbal, Nicola Begley, Matthew Baxter, \Andrew S I\ Loudon, Magnus Rattray, \David W\ Ray (2026). Glucocorticoid-dependence and independence of the circadian liver transcriptome. npj Biological Timing and Sleep.

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Emine Beyza Çandır, Halil İbrahim Kuru, Magnus Rattray, A Ercument Cicek, Oznur Tastan (2026). One-Hot News: Drug Synergy Models Shortcut Molecular Features. Bioinformatics.

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Logan Brase, Declan R. Creamer, Yuliya Shapovalova, Mark P. Ashe, Hilary L. Ashe, Magnus Rattray (2025). Genomic foundation models reveal RNA-binding proteins regulating translation and mRNA degradation during Drosophila development. openRxiv.

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