Magnus Rattray

Latest

CellTypeAI: Automated cell identification for scRNA-seq using local generative-AI
Integration of unpaired and heterogeneous clinical flow cytometry data
Glucocorticoid-dependence and independence of the circadian liver transcriptome
One-Hot News: Drug Synergy Models Shortcut Molecular Features
Genomic foundation models reveal RNA-binding proteins regulating translation and mRNA degradation during Drosophila development
Decoding the Spatial and Epigenetic Logic of Early Skin Development
From Discovery to Delivery: A Rapid and Targeted Proteomics Workflow for Monitoring Chinese Hamster Ovary Biomanufacturing
Spatial gene regulatory networks driving cell state transitions during human liver disease
Flux Sampling Suggests Metabolic Signatures of High Antibody‐Producing CHO Cells
CellPie : a scalable spatial transcriptomics factor discovery method via joint non-negative matrix factorization
Exploiting the SunTag system to study the developmental regulation of mRNA translation
Multi-omics analysis in primary T cells elucidates mechanisms behind disease-associated genetic loci
Spatially regulated mRNA decay sharpens expression patterns in the Drosophila embryo
Transferability of Single- and Cross-Tissue Transcriptome Imputation Models Across Ancestry Groups
Scalable Multi-Output Gaussian Processes with Stochastic Variational Inference
From Discovery to Delivery: A Rapid and Targeted Proteomics Workflow for Monitoring Chinese Hamster Ovary Biomanufacturing
GPMelt: A hierarchical Gaussian process framework to explore the dark meltome of thermal proteome profiling experiments
Identification of differences in CD4+ T-cell gene expression between people with asthma and healthy controls
SynBa: improved estimation of drug combination synergies with uncertainty quantification
Modulation of transcription burst amplitude underpins dosage compensation in the Drosophila embryo
Modulation of transcription burst amplitude underpins dosage compensation in the Drosophila embryo
Chronic inflammatory arthritis drives systemic changes in circadian energy metabolism
Murine AGM single-cell profiling identifies a continuum of hemogenic endothelium differentiation marked by ACE
Sex differences in innate anti-viral immune responses to respiratory viruses and in their clinical outcomes in a birth cohort study
Scalable inference of transcriptional kinetic parameters from MS2 time series data
Chromatin Looping Links Target Genes with Genetic Risk Loci for Dermatological Traits
Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments
Inferring kinetic parameters of oscillatory gene regulation from single cell time series data
HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation
A model of k-mer surprisal to quantify local sequence information content surrounding splice regions
Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19
Sex differences in innate anti-viral immune responses to respiratory viruses
Modulation of the Promoter Activation Rate Dictates the Transcriptional Response to Graded BMP Signaling Levels in the Drosophila Embryo
OscoNet: inferring oscillatory gene networks
Using functional genomics to advance the understanding of psoriatic arthritis
Glucocorticoids rapidly inhibit cell migration through a novel, non-transcriptional HDAC6 pathway
Longitudinal immune profiling reveals distinct features of COVID-19 pathogenesis
Uncovering tissue-speciﬁc binding features from diﬀerential deep learning
Modulation of the promoter activation rate dictates the transcriptional response to graded BMP signaling levels in the Drosophila embryo
Modelling gene expression dynamics with Gaussian process inference